Computational Science • Bioinformatics • Scientific Software

Data-Mining Analytical Data in Life Science.

Ever made analyses and ended up with opaque files and some basic results from an analytical instrument? Disappointed with the results and wondering if you could get more out of your data?

At Nerium Analytics I can provide you with over ten years of expertise in life science data analysis. This includes data processing, data mining, cheminformatics, omics analyses including metabolomics, lipidomics, proteomics and genomics. Need to report your data? I can also provide you with simple reporting apps or more complex custom software with quality exports.

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Services

Computational solutions for scientific research

Project organization

Searching the literature to assess project feasibility and establishing a plan of action with the necessary steps along with resources and time frames.

Analytical chemistry

Advice on small molecule extractive chemistry, sample preparation, quality control, setting parameters for high resolution LC-MS instruments.

Data processing

Producing feature lists from raw data, combining negative and positive ion mode data, targeted and untargeted identification / annotation with spectral libraries.

Cheminformatics & Data analysis

Computational workflows for chemical profiling, clustering, correlation analysis, biomarker identification, function analysis and multi-omics integration.

Bioinformatics & Omics

Analysis pipelines and reproducible workflows for metabolomics, lipidomics, proteomics, transcriptomics and genomics data using modern scientific tooling.

Scientific Software Development

Custom applications, dashboards, APIs, and reporting tools built with Python, R, Shiny, Flask, SQL, HTML, CSS, and JavaScript.

About

Scientific expertise combined with practical software development for research environments.

With a background in metabolomics and computational biology, I develop data-driven solutions for researchers, biotech teams, and scientific organizations working with complex biological and chemical datasets.

My experience spans LC-MS data preprocessing, statistical analysis, bioinformatics, multi-omics integration, interactive applications, and scientific visualization using Python, R, Shiny, Flask, JavaScript, and modern analytical frameworks.

01 Omics, cheminformatics & LC-MS expertise
02 Scientific software & dashboards
03 Statistics & multi-omics integration

Contact

Discuss your research or data challenges

Whether you need bioinformatics analysis, omics workflows, scientific software, interactive dashboards, or custom data solutions, I'd be happy to discuss your project and how I can help.

Publications

Scientific publications

Peer-reviewed work with collaborators in metabolomics, computational biology, cheminformatics, and data-driven life science research.

September 2025 Nature Metabolism

The Neurolipid Atlas: a lipidomics resource for neurodegenerative diseases

Femke M. Feringa, Sascha J. Koppes-den Hertog, Lian Y. Wang, Rico J. E. Derks, Iris Kruijff, Lena Erlebach, Jorin Heijneman, Ricardo Miramontes, Nadine Pömpner, Niek Blomberg, Damien Olivier-Jimenez, Lill Eva Johansen, Alexander J. Cammack, Ashling Giblin, Christina E. Toomey, Indigo V. L. Rose, Hebao Yuan, Michael E. Ward, Adrian M. Isaacs, Martin Kampmann, Deborah Kronenberg-Versteeg, Tammaryn Lashley, Leslie M. Thompson, Alessandro Ori, Yassene Mohammed, Martin Giera & Rik van der Kant

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July 2025 Analytical Chemistry

Multilaboratory Untargeted Mass Spectrometry Metabolomics Collaboration to Identify Bottlenecks and Comprehensively Annotate A Single Dataset

Joelle Houriet, Preston K. Manwill, Armando Alcázar Magaña, Victoria M. Anderson, Mehdi A. Beniddir, Samuel Bertrand, Jaewoo Choi, Trevor N. Clark, Leonard J. Foster, Maria Halabalaki, Alan K. Jarmusch, Niek F. de Jonge, Aswad Khadilkar, John B. MacMillan, Claudia S. Maier, Luke C. Marney, Guillaume Marti, Eleni V. Mikropoulou, Damien Olivier-Jimenez, Amélie Perez, Justin J. J. van der Hooft, Mitja M. Zdouc, Roger G. Linington & Nadja B. Cech

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February 2025 Nature Neuroscience

Neuronal polyunsaturated fatty acids are protective in ALS/FTD

Ashling Giblin, Alexander J. Cammack, Niek Blomberg, Sharifah Anoar, Alla Mikheenko, Mireia Carcolé, Magda L. Atilano, Alex Hull, Dunxin Shen, Xiaoya Wei, Rachel Coneys, Lele Zhou, Yassene Mohammed, Damien Olivier-Jimenez, Lian Y. Wang, Kerri J. Kinghorn, Teresa Niccoli, Alyssa N. Coyne, Rik van der Kant, Tammaryn Lashley, Martin Giera, Linda Partridge & Adrian M. Isaacs

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January 2025 Analytical Chemistry

iSODA: A Comprehensive Tool for Integrative Omics Data Analysis in Single- and Multi-Omics Experiments

Damien Olivier-Jimenez, Rico J. E. Derks, Oscar Harari, Carlos Cruchaga, Muhammad Ali, Alessandro Ori, Domenico Di Fraia, Birol Cabukusta, Andy Henrie, Martin Giera & Yassene Mohammed

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June 2024 Nature Metabolism

Navigating the complexities of docking tools with nicotinic receptors and acetylcholine binding proteins in the realm of neonicotinoids

Zakaria Bouchouireb, Damien Olivier-Jimenez, Titouan Jaunet-Lahary, Steeve H. Thany, Jean-Yves Le Questel

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May 2024 Nature Metabolism

METLIN-CCS Lipid Database: An authentic standards resource for lipid classification and identification

Erin S. Baker, Winnie Uritboonthai, Aries Aisporna, Corey Hoang, Heino M. Heyman, Lisa Connell, Damien Olivier-Jimenez, Martin Giera & Gary Siuzdak

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February 2024 iScience

Spatially and temporally resolved metabolome of the human oral cavity

Alessio Ciurli, Yassene Mohammed, Christine Ammon, Rico J.E. Derks, Damien Olivier-Jimenez, Quinten R. Ducarmon, Marije Slingerland, Jacques Neefjes & Martin Giera

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July 2022 Phytochemical Analysis

New insights into the Van Krevelen diagram: Automated molecular formula determination from HRMS for a large chemical profiling of lichen extracts

Simon Ollivier, Philippe Jéhan, Damien Olivier-Jimenez, Fabian Lambert, Joël Boustie, Françoise Lohézic-Le Dévéhat, Nicolas Le Yondre

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June 2022 Phytochemical Analysis

ASAP-MS and DART-MS as ancillary tools for direct analysis of the lichen metabolome

Simon Ollivier, Philippe Jéhan, Fabian Lambert, Damien Olivier-Jimenez, Joël Boustie, Françoise Lohézic-Le Dévéhat, Nicolas Le Yondre

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May 2022 Food & Function

An insight into an intriguing oxidative biotransformation pathway of 5-O-caffeoylquinic acid by a gut bacterium

G. Balaj, Z. Tamanai-Shacoori, D. Olivier-Jimenez, A. Sauvager, M. Faustin, L. Bousarghin, S. David-Le Gall, S. Guyot, D. Nebija, S. Tomasi, M. L. Abasq

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December 2020 Plant and Fungal Systematics

Chemical diversity of five coastal Roccella species from mainland France, the Scattered Islands, and São Tomé and Príncipe

Solenn Ferron, Olivier Berry, Damien Olivier-Jimenez, Isabelle Rouaud, Joël Boustie, Françoise Lohézic-Le Dévéhat, Remy Poncet

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November 2019 Scientific Data

A database of high-resolution MS/MS spectra for lichen metabolites

Damien Olivier-Jimenez, Marylène Chollet-Krugler, David Rondeau, Mehdi A. Beniddir, Solenn Ferron, Thomas Delhaye, Pierre-Marie Allard, Jean-Luc Wolfender, Harrie J. M. Sipman, Robert Lücking, Joël Boustie & Pierre Le Pogam

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